TrustVDJ (version 0.1.0)

.ReadAIRR: Read AIRR file.

Description

.ReadAIRR reads an AIRR format file from TRUST4/cellranger results or somewhere else. It could be xx_airr.tsv or xx_barcode_airr.tsv generated by TRUST4 or airr_rearrangement.tsv generated by 10x cellranger (> 6.0). (.gz supported)

Usage

.ReadAIRR(airr_file = NULL, verbose = TRUE)

Arguments

airr_file

character. Path to AIRR file, eg. xx_airr.tsv or xx_barcode_airr.tsv.

verbose

logical. Print progress. Default is TRUE

Value

A VDJ information data.frame

Examples

# NOT RUN {
airr_file = system.file('extdata', 'TRUST4_airr.tsv.gz', package = 'TrustVDJ')
airr = .ReadAIRR(airr_file = airr_file, verbose = FALSE)
head(airr)

# }