Trust-class

Trust

The Trust object is the center of each single-cell immune repertoire analysis.
slots are listed below:

A toolkit for read and prepare immune repertoire data. 'TrustVDJ' package focuses on the reading and processing of 'TRUST4' and '10x cellranger' software output results by using 'ReadTrust' and 'Read10x' functions, respectively, and also provides a convenience function 'build_IMGT_reference' to download the 'IMGT' database reference and split its sequences by species.

Lianhao Song

TrustVDJ

Tools for Immune Repertoire Analysis

Trust-class function

<dl class="dl-horizontal">
<dt><code>barcode</code></dt><dd>character. Cell barcode in single-cell sequencing, eg: Sample1_ATGCCAGAACGACT.</dd></dl><dt><code>celltype</code></dt><dd>character. Inferred cell type, such as: abT, gdT or B.</dd><dt><code>Achain</code></dt><dd>consensus. confident TCR/BCR Alpha-chain object.</dd><dt><code>Bchain</code></dt><dd>consensus. confident TCR/BCR Beta-chain object.</dd><dt><code>Achain2</code></dt><dd>list. secondary TCR/BCR Alpha-chain objects.</dd><dt><code>Bchain2</code></dt><dd>list. secondary TCR/BCR Beta-chain objects.</dd>

Trust-class: The Trust class

Description

Arguments

Value

Slots