calc_pw_mut_cnv

Prepare Mut/CNV data of pathways given specific samples

Provides functions and a Shiny application for downloading,
analyzing and visualizing datasets from UCSC Xena
(<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.

Shixiang Wang

UCSCXenaShiny

Interactive Analysis of UCSC Xena Data

Shensuo Li

Yi Xiong

Longfei Zhao

Kai Gu

Yin Li

Fei Zhao

calc_pw_mut_cnv function

<dl><dt>tumor_samples</dt>
<dd>Select specific tumor samples. Default NULL, indicating all tumor samples.</dd></dl>

Arguments

Prepare Mut/CNV data of pathways given specific samples — calc_pw_mut_cnv

<dl>

<dt>tumor_samples</dt>
<dd>Select specific tumor samples. Default NULL, indicating all tumor samples.</dd>

</dl>

calc_pw_mut_cnv: Prepare Mut/CNV data of pathways given specific samples

Description

Usage

Arguments