UCSCXenaTools (version 0.2.4)

XenaGenerate: Generate and Subset a XenaHub Object from XenaData

Description

Generate and Subset a XenaHub Object from XenaData

Usage

XenaGenerate(XenaData = UCSCXenaTools::XenaData, subset = TRUE)

Arguments

XenaData

a data.frame. Default is data(XenaData). The input of this argument can only be data(XenaData) or its subset.

subset

logical expression indicating elements or rows to keep.

Value

a XenaHub object.

Examples

# NOT RUN {
# 1 get all datasets
XenaGenerate()
# 2
XenaGenerate(subset = XenaCohorts == "TCGA Breast Cancer (BRCA)")
# 3
XenaGenerate(subset = grepl("BRCA", XenaCohorts))
# }