UCSCXenaTools (version 0.2.4)

XenaPrepare: Prepare (Load) datasets to R download from UCSC Xena

Description

Prepare (Load) datasets to R download from UCSC Xena

Usage

XenaPrepare(objects, objectsName = NULL, comment = "#", na = c("",
  "NA", "[Discrepancy]"), ...)

Arguments

objects

a object of character vector or data.frame. If objects is data.frame, it should be returned object of XenaDownload function. More easier way is that objects can be character vector specify local files/directory and download urls.

objectsName

specify objectsName of result

comment

a character specify comment rows in files

na

a character vectory specify NA values in files

...

other arguments transfer to read_tsv function of readr package

Value

a list contains file data, which in way of tibbles

Examples

# NOT RUN {
xe = XenaGenerate(subset = XenaHostNames == "TCGA")
hosts(xe)
xe_query = XenaQuery(xe)
# }
# NOT RUN {
xe_download = XenaDownload(xe_query)
dat = XenaPrepare(xe_download)
# }