UNDO (version 1.14.0)

UNDO-package: Implementation of UNDO (unsupervised deconvolution of tumor-stromal mixed expressions)

Description

This package contains main function "two_source_deconv" to implement the deconvolution of mixed tumor-stromal expressions in a completely unsupervised way. The prior knowledge of mixing matrix or pure expression is not needed. The package detects marker genes and calculate the mixing matrix and pure expressions automatically.

Details

Package:

UNDO

Type:

Package

Version:

1.7.3

Date:

2014-04-30

License:

GPL version 2 or later

two_source_deconv(ExpressionData,lowper=0.4,highper=0.1,epsilon1=0.01,epsilon2=0.01,A=NULL,S1=NULL,S2=NULL,return=0)

Examples

data(NumericalMixMCF7HS27)
X <- NumericalMixMCF7HS27
deconvResult <- two_source_deconv(X, lowper = 0.4, highper = 0.1, epsilon1 = 0.1, epsilon2 = 0.1, A = NULL, S1=NULL, S2=NULL, return = 0)