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Umatrix (version 4.0)

Visualization of Structures in High-Dimensional Data

Description

By gaining the property of emergence through self-organization, the enhancement of SOMs(self organizing maps) is called Emergent SOM (ESOM). The result of the projection by ESOM is a grid of neurons which can be visualised as a three dimensional landscape in form of the Umatrix. Further details can be found in the referenced publications (see url). This package offers tools for calculating and visualising the ESOM as well as Umatrix, Pmatrix and UStarMatrix. All the functionality is also available through graphical user interfaces implemented in 'shiny'. Based on the recognized data structures, the method can be used to generate new data.

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Version

Install

install.packages('Umatrix')

Monthly Downloads

774

Version

4.0

License

GPL-3

Maintainer

Jorn Lotsch

Last Published

April 25th, 2024

Functions in Umatrix (4.0)

Umatrix-package

Umatrix-package
calculate_Delauny_radius

Calculate the Delauny graph based radius
iUstarmatrix

iUstarmatrix
iEsomTrain

iEsomTrain
generate_data

Generative ESOM
iClassification

GUI for manual classification
iUmapIsland

iUmapIsland
Hepta

Hepta from FCPS (Fundamental Clustering Problem Suite)
BMUHepta

Best matching units (BMU) of Hepta from FCPS (Fundamental Clustering Problem Suite)
esomTrain

Train an ESOM (emergent self organizing map) and project data
plotMatrix

plotMatrix
showMatrix3D

showMatrix3D
pmatrixForEsom

pmatrixForEsom
umatrixForEsom

umatrixForEsom
ustarmatrixCalc

ustarmatrixCalc