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UniprotR (version 1.0.3)

Retrieving Information of Proteins from Uniprot

Description

Connect to Uniprot to retrieve information about proteins using their accession number such information could be name or taxonomy information.

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Version

Install

install.packages('UniprotR')

Monthly Downloads

577

Version

1.0.3

License

GPL-3

Maintainer

Mohamed Soudy

Last Published

August 19th, 2019

Functions in UniprotR (1.0.3)

GetExpression

Connect and parse UniProt Expression information.
GetGeneral_Information

Connect and parse UniProt General Information.
GetFamily_Domains

Connect and parse UniProt Family Domains information.
GetAccessionList

Connect and parse UniProt information.
GetCross_references_Information

Connect and parse UniProt Cross-references information.
GetNamesTaxa

Connect and parse UniProt Names Taxa information.
ConstructLocTree

Connect and parse UniProt information.
GetMiscellaneous

Connect and parse UniProt Miscellaneous information.
GetPTM_Processsing

Connect and parse UniProt PTM_Processsing information.
GetPathology_Biotech

Connect and parse UniProt Pathology_Biotech information.
ConvertID

Connect and parse UniProt database identifiers information.
GetProteinInteractions

Connect and parse UniProt protein Interactions information.
HandleBadRequests

Handle bad requests This Function is used to handle possible errors when trying to get url response.
PlotProteinGO_bio

Connect and parse UniProt information.
GetPublication

Connect and parse UniProt Publication about a protein information.
PlotProteinGO_cel

Connect and parse UniProt information.
PlotProteinGO_molc

Connect and parse UniProt information.
GetProteinAnnontate

Connect and parse UniProt information.
GetTaxonomic_lineage

Connect and parse UniProt Taxonomic_lineage information.
GetpdbStructure

Connect and parse UniProt information.
GetTaxaidentifier

Connect and parse UniProt protein taxonomic information.
GetproteinNetwork

Connect and parse stringdb information.
PlotProteinTaxa

Connect and parse UniProt information.
GetSequences

Connect and parse UniProt Sequences information.
GetSubcellular_location

Connect and parse UniProt protein Subcellular location information.
GetProteinGOInfo

Connect and parse UniProt proteins gene ontology information.
GetProteinFunction

Connect and parse UniProt Protein Function information.
UniprotR

UniprotR: A package for retrieving proteins information from UniProt.
PlotSummaryInfo

Connect and parse UniProt information.