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UniprotR (version 1.3.1)

Retrieving Information of Proteins from Uniprot

Description

Connect to Uniprot to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication .

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Version

Install

install.packages('UniprotR')

Monthly Downloads

577

Version

1.3.1

License

GPL-3

Issues

0

Pull Requests

3

Stars

68

Forks

18

Maintainer

Mohamed Soudy

Last Published

June 13th, 2020

Functions in UniprotR (1.3.1)

ConstructGenesTree

Connect and parse UniProt information.
GetExpression

Connect and parse UniProt Expression information.
GetPathology_Biotech

Connect and parse UniProt Pathology_Biotech information.
GetPTM_Processing

Connect and parse UniProt PTM_Processsing information.
GetCross_references_Information

Connect and parse UniProt Cross-references information.
GetSequences

Connect and parse UniProt Sequences information.
GetMiscellaneous

Connect and parse UniProt Miscellaneous information.
GetStructureInfo

Connect and parse UniProt protein Structure information.
GetProteinGOInfo

Connect and parse UniProt proteins gene ontology information.
GetFamily_Domains

Connect and parse UniProt Family Domains information.
GetAccessionList

Connect and parse UniProt information.
Goparse

Connect and parse UniProt information.
GetproteinNetwork

Connect and parse stringdb information.
ConvertID

Connect and parse UniProt database identifiers information.
GetProteinInteractions

Connect and parse UniProt protein Interactions information.
GetGeneral_Information

Connect and parse UniProt General Information.
GetPublication

Connect and parse UniProt Publication about a protein information.
GetSeqLength

Connect and parse UniProt Sequences information.
GetpdbStructure

Connect and parse UniProt information.
PlotproteinExist

Connect and parse UniProt information.
GetTaxonomic_lineage

Connect and parse UniProt Taxonomic_lineage information.
PlotSummaryInfo

Connect and parse UniProt information.
GetProteomeFasta

Connect and DOWNLOAD Proteome info.
GetNamesTaxa

Connect and parse UniProt Names Taxa information.
GetProteinFunction

Connect and parse UniProt Protein Function information.
GetProteinAnnontate

Connect and parse UniProt information.
GetProteomeInfo

Connect and DOWNLOAD Proteome info.
PlotGoInfo

Connect and parse UniProt information.
PlotPhysicochemical

Connect and parse UniProt information.
PlotProteinTaxa

Connect and parse UniProt information.
GetTaxaidentifier

Connect and parse UniProt protein taxonomic information.
PlotProteinGO_molc

Connect and parse UniProt information.
GetSubcellular_location

Connect and parse UniProt protein Subcellular location information.
PlotproteinScore

Connect and parse UniProt information.
PlotproteinStatus

Connect and parse UniProt information.
HandleBadRequests

Handle bad requests This Function is used to handle possible errors when trying to get url response.
PlotChromosomeInfo

Connect and parse UniProt information.
PlotProteinGO_bio

Connect and parse UniProt information.
ProcessAcc

Connect and parse UniProt information.
PlotProteinGO_cel

Connect and parse UniProt information.
plotGoannotation

Connect and parse UniProt information.
ConstructLocTree

Connect and parse UniProt information.