calculate_similarity_results

sim_list

sim_list_stats

Mapping to mutations from query to reference mutation set

found_mut_mapping

Minimal amount of required matching mutations

minimum_matching_mutations

p_value

q_value

Threshold above which a positive prediction occurs
default 3.0

confidence_score

The start and end positions of variants in the query

vcf_fingerprint

panels

list_of_cls

This packages enables users to identify cancer cell lines. Cancer cell line
misidentification and cross-contamination reprents a significant challenge for
cancer researchers. The identification is vital and in the frame of this package based
on the locations/ loci of somatic and germline mutations/ variations.
The input format is vcf/ vcf.gz and the files have to contain a single cancer cell line sample
(i.e. a single member/genotype/gt column in the vcf file).
The implemented method is optimized for the Next-generation whole exome and whole genome DNA-sequencing
technology.

calculate_similarity_results: calculate_similarity_results

Description

Usage

Arguments

Value