initiate_db_and_load_data

Reference genome version. All training sets are 
associated with a reference genome version. Default: GRCH37

ref_gen

Names of the tables to be extracted from the database

request_table

Indicate whether the default db should be used as source for the data

load_default_db


Intern utility function, loads database and return the sim_list and sim_list_stats variables.


This packages enables users to identify cancer cell lines. Cancer cell line
misidentification and cross-contamination reprents a significant challenge for
cancer researchers. The identification is vital and in the frame of this package based
on the locations/ loci of somatic and germline mutations/ variations.
The input format is vcf/ vcf.gz and the files have to contain a single cancer cell line sample
(i.e. a single member/genotype/gt column in the vcf file).
The implemented method is optimized for the Next-generation whole exome and whole genome DNA-sequencing
technology.

initiate_db_and_load_data: initiate_db_and_load_data

Description

Usage

Arguments

Value