parse_vcf_file

Path to the vcf file on the operating system

vcf_file_path


Parses the vcf file and filters all information except for the start and length of variations/ mutations.


This packages enables users to identify cancer cell lines. Cancer cell line
misidentification and cross-contamination reprents a significant challenge for
cancer researchers. The identification is vital and in the frame of this package based
on the locations/ loci of somatic and germline mutations/ variations.
The input format is vcf/ vcf.gz and the files have to contain a single cancer cell line sample
(i.e. a single member/genotype/gt column in the vcf file).
The implemented method is optimized for the Next-generation whole exome and whole genome DNA-sequencing
technology.

parse_vcf_file: parse_vcf_file

Description

Usage

Arguments

Value