re_calculate_cl_weights

R Table which contains a mapping 
from mutations/ variations to their containing CLs

sim_list

Reference genome version. All training sets are 
associated with a reference genome version. Default: GRCH37

ref_gen


This function re-calculates the weights of mutation after a change of the training set


This packages enables users to identify cancer cell lines. Cancer cell line
misidentification and cross-contamination reprents a significant challenge for
cancer researchers. The identification is vital and in the frame of this package based
on the locations/ loci of somatic and germline mutations/ variations.
The input format is vcf/ vcf.gz and the files have to contain a single cancer cell line sample
(i.e. a single member/genotype/gt column in the vcf file).
The implemented method is optimized for the Next-generation whole exome and whole genome DNA-sequencing
technology.

re_calculate_cl_weights: Re-calculate sim_list_weights

Description

Usage

Arguments

Value