remove_custom_vcf_from_database

name of the cancer cell line training fingerprintt

name_cl

Reference genome version. All training sets are associated with a reference genome version. Default: GRCH37

ref_gen

test_mode


Removes a cancer cell line training fingerprint (vcf file) from the database. The names of all training sets can 
be seen by using the function <code>show_contained_cls</code>.


This packages enables users to identify cancer cell lines. Cancer cell line
misidentification and cross-contamination reprents a significant challenge for
cancer researchers. The identification is vital and in the frame of this package based
on the locations/ loci of somatic and germline mutations/ variations.
The input format is vcf/ vcf.gz and the files have to contain a single cancer cell line sample
(i.e. a single member/genotype/gt column in the vcf file).
The implemented method is optimized for the Next-generation whole exome and whole genome DNA-sequencing
technology.

Raik Otto

Uniquorn

Identification of cancer cell lines based on their weighted mutational/ variational fingerprint

remove_custom_vcf_from_database function

Removes a cancer cell line training fingerprint (vcf file) from the database. The names of all training sets can 
be seen by using the function <code>show_contained_cls</code>.

remove_custom_vcf_from_database: Removes a cancer cell line training fingerprint (vcf file) from the database. The names of all training sets can be seen by using the function `show_contained_cls`.

Description

Usage

Arguments

Value

Examples