show_contained_cls

Reference genome version. All training sets are associated with a reference genome version. Default: GRCH37

ref_gen


Show all cancer cell line identifier present in the database for a selected reference genome:
This function shows the names, amount of mutations/ variations, overall weight of the mutations of all contained training CLs 
for a chosen reference genome.


This packages enables users to identify cancer cell lines. Cancer cell line
misidentification and cross-contamination reprents a significant challenge for
cancer researchers. The identification is vital and in the frame of this package based
on the locations/ loci of somatic and germline mutations/ variations.
The input format is vcf/ vcf.gz and the files have to contain a single cancer cell line sample
(i.e. a single member/genotype/gt column in the vcf file).
The implemented method is optimized for the Next-generation whole exome and whole genome DNA-sequencing
technology.

show_contained_cls: show_contained_cls

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