show_contained_mutations

ref_gen


Show all mutations present in the database for a selected reference Genome: 
This function shows all training-set mutations for a selected reference genome, i.e. the mutations that are being used
for identification of query cancer cell lines.


This packages enables users to identify cancer cell lines. Cancer cell line
misidentification and cross-contamination reprents a significant challenge for
cancer researchers. The identification is vital and in the frame of this package based
on the locations/ loci of somatic and germline mutations/ variations.
The input format is vcf/ vcf.gz and the files have to contain a single cancer cell line sample
(i.e. a single member/genotype/gt column in the vcf file).
The implemented method is optimized for the Next-generation whole exome and whole genome DNA-sequencing
technology.

show_contained_mutations: show_contained_mutations

Description

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Examples