show_which_cls_contain_mutation

Name of the mutation in the format CHROMOSOME_START_STOP, e.g. '11_244501_244510'

mutation_name

ref_gen


Show all cancer cell lines in the database which contained the specified mutation and reference Genome. Closed interval coordinates. Format mutation: CHR_START_STOP, e.g. 1_123_123


This packages enables users to identify cancer cell lines. Cancer cell line
misidentification and cross-contamination reprents a significant challenge for
cancer researchers. The identification is vital and in the frame of this package based
on the locations/ loci of somatic and germline mutations/ variations.
The input format is vcf/ vcf.gz and the files have to contain a single cancer cell line sample
(i.e. a single member/genotype/gt column in the vcf file).
The implemented method is optimized for the Next-generation whole exome and whole genome DNA-sequencing
technology.

show_which_cls_contain_mutation: show_which_cls_contain_mutation

Description

Usage

Arguments

Value

Examples