UpSetVP (version 1.0.0)

baima: EcM Fungal Data with Environmental Variables

Description

Ectomycorrhizal (EcM) fungal community and environmental data were excerpted from Gong et al. (2022). Sampling was conducted along the elevation gradient (2,900 m to 4,500 m) in the eastern slope of Baima Snow Mountain during both dry (November 2017) and wet (August 2018) seasons after studying community compositions of the host plants of EcM fungi.

Usage

data(baima.fun)
data(baima.env)

Format

263 samples from the root tips were excerpted. There are two linked data sets: baima.fun, a data frame containing 3,099 amplicon sequence variants (ASVs) of root associated EcM fungi; baima.env, a data frame containing 14 environmental variables.

The fields in the environmental data are:

environmental_medium

Sample type

latitude

Latitude

lontitude

Lontitude

altitude

Elevation (m)

season

Season, a factor with levels dry and wet

em.GR

Richness of EcM plant at genus level

em.abun

The number of individuals of each EcM genus

sea.MT

Dry-season and wet-season mean temperature

pH

Soil pH

TP

Total phosphorus (g/kg)

TK

Total potassium (g/kg)

AN

Alkaline-hydrolysable nitrogen (mg/kg)

AP

Available phosphorus (mg/kg)

AK

Available potassium (mg/kg)

References

Gong S, Feng B, Jian S P, et al. Elevation Matters More than Season in Shaping the Heterogeneity of Soil and Root Associated Ectomycorrhizal Fungal Community. Microbiology spectrum, 2022, 10(1): e01950-21.

Examples

# NOT RUN {
data(baima.fun)
data(baima.env)
# }