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VDJgermlines (version 0.1)

Variable, Diversity and Joining Sequences from Various Species

Description

Contains variable, diversity, and joining sequences and accompanying functions that enable both the extraction of and comparison between immune V-D-J genomic segments from a variety of species. Sources include IMGT from MP Lefranc (2009) and Vgenerepertoire from publication DN Olivieri (2014) .

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Version

Install

install.packages('VDJgermlines')

Monthly Downloads

143

Version

0.1

License

GPL-2

Maintainer

Alexander Yermanos

Last Published

December 18th, 2018

Functions in VDJgermlines (0.1)

VDJphylo

Infers basic phylogenetic trees of VDJ germlines of interest with basic distance methods.
VDJgermlines

VDJgermlines
extractSequencesR

Extracts the germline genes of interest and stores them as a dataframe
VDJheatmap

Calculates the distance between VDJ germlines of interest and produces a matrix that can be used for further analysis or viewed using Heatmap/pheatmap/ComplexHeatmap.