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VIGoR (version 1.1.5)

Variational Bayesian Inference for Genome-Wide Regression

Description

Conducts linear regression using variational Bayesian inference, particularly optimized for genome-wide association mapping and whole-genome prediction which use a number of DNA markers as the explanatory variables. Provides seven regression models which select the important variables (i.e., the variables related to response variables) among the given explanatory variables in different ways (i.e., model structures).

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Version

Install

install.packages('VIGoR')

Monthly Downloads

203

Version

1.1.5

License

MIT + file LICENSE

Maintainer

Akio Onogi

Last Published

September 11th, 2024

Functions in VIGoR (1.1.5)

Y

An example of response variables.
predict_vigor

Predict Y of new data using a training result with vigor
vigor

Variational Bayesian inference for genome-wide regression
hyperpara

Calculation of hyperparameter values
Z

An example of fixed effects (explanatory variables)
X

An example of SNP genotypes (explanatory variables)