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VIProDesign (version 0.1.0)

A Comprehensive Tool for Protein Design

Description

Provides tools for designing virus protein panels through sequence clustering and protein sequence analysis. The package includes functionality for filtering sequences, removing redundancy, identifying outliers, clustering sequences, and calculating entropy to evaluate clustering quality. A publication describing these methods is in preparation and will be added once available.

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Version

Install

install.packages('VIProDesign')

Monthly Downloads

93

Version

0.1.0

License

Apache License 2.0

Maintainer

Tatsiana Bylund

Last Published

May 2nd, 2025

Functions in VIProDesign (0.1.0)

phyl_tree_cluster_dbscan

Perform DBSCAN Clustering on a Phylogenetic Tree
filter_sequences

Filter Sequences
phyl_tree_distance_k

Calculate Phylogenetic Tree Distances
entropy_RR

Calculate Entropy for Amino Acid Sequences
run_VIProDesign

Run VIProDesign Workflow