VSE (version 0.99)

intersectMatrix: intersectMatrix

Description

This function will count the intersection tally of AVS and genomic regions

Usage

intersectMatrix(avs, regions, ...)

Arguments

avs

A GRanges object which is outputted by loadLd function

regions

A data frame. The data frame contains sample sheet identical to DiffBind or ChIPQC input sample sheets

...

Heatmap arguments

Examples

## Not run: 
# intersectMatrix(avs,
#                 regions=samples,
#                 col=c("white","grey10"),
#                 scale="none",
#                 margins=c(10,5),
#                 cexRow = 1,
#                 cexCol = 0.5,
#                 Rowv=NA,
#                 Colv=NA)
# ## End(Not run)