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VSE (version 0.99)

variantSetEnrichment: variantSetEnrichment

Description

This function will calculate matching random variant sets (MRVS) idential to AVS

Usage

variantSetEnrichment(avs, mrvs, regions)

Arguments

avs
A GRangesList object which is outputted by makeAVS function
mrvs
A list of GRangesList objects outputted by makeMRVS function
regions
A data frame. The data frame contains sample sheet identical to DiffBind or ChIPQC input sample sheets

Examples

Run this code
## Not run: 
# variantSetEnrichment(avs, mrvs, regions=samples)
# #We have included the output from our example analysis with the package. \
# You can load the example VariantSetEnrichment output by typing:
# load(file.path(system.file("extdata", "vse_output.Rda", package="VSE")))
# ## End(Not run)

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