VanillaICE (version 1.34.0)

BeadStudioSetList: Deprecated BeadStudioSet and BeadStudioSetList

Description

The BeadStudioSet, BeadStudioSetList classes are deprecated. The corresponding constructor and classes are provided only for compatability with older versions and will be defunct at the next release.

Usage

BeadStudioSetList(x, ...)
BeadStudioSet(filenames, header_info, genome = c("hg19", "hg18"), annotationPkg, chromosome = 1:22, ...)

Arguments

x

a BeadStudioSte

...

ignored

filenames

full path to input files

header_info

header information

genome

character string indicating genome build

annotationPkg

name of annotation package

chromosome

which chromosomes to process

Details

Use the replacement function SnpArrayExperiment. For reading in plain text source files such as GenomeStudio-processed data (Illumina platform), see CopyNumScanParams and parseSourceFile.

See Also

link{CopyNumScanParams} parseSourceFile