VanillaICE (version 1.34.0)

HMM-class: Container for the segmented data and the 6-state HMM model parameters

Description

Container for the segmented data and the 6-state HMM model parameters

The contructor HMM creates and object of class HMM. Not typically called directly by the user.

Usage

HMM(granges = GRanges(), param = HmmParam(), posterior = matrix(), filters = FilterParam())
"state"(object)
"show"(object)

Arguments

granges

a GRanges object

param

a HmmParam object

posterior

matrix of posterior probabilities

filters

an object of class FilterParam

object

a HMM object

Slots

granges

a GRanges object

param

a HmmParam object

posterior

a matrix of posterior probabilities

filters

a FilterParam object

See Also

hmm2

Examples

data(snp_exp)
hmm_list <- hmm2(snp_exp[,1])
resultsFirstSample <- hmm_list[[1]]
resultsFirstSample
HMM()