VanillaICE (version 1.34.0)

HMMList-class: Class, constructor, and methods for representing HMM results from multiple samples

Description

Each element of the HMMList contains the genomic intervals of the HMM segmentation (GRanges-derived object), parameters from the Baum-Welch, and a FilterParam object.

Usage

"show"(object)
"unlist"(x, recursive = TRUE, use.names = TRUE)

Arguments

object

a HMMList object

x

a HMMList object

recursive

logical; currently ignored

use.names

logical; currently ignored

Slots

.Data

a list. Each element of the list should be a HMM object.

See Also

HMM

Examples

data(snp_exp)
fit <- hmm2(snp_exp)
class(fit)
identical(length(fit), ncol(snp_exp))
unlist(fit)