VanillaICE (version 1.34.0)

HmmTrellisParam: Constructor for HmmTrellisParam class

Description

Constructor for HmmTrellisParam class

Usage

HmmTrellisParam(ylimits = list(c(0, 1), c(-3, 1)), expandfun = function(g) { width(g) * 50 })

Arguments

ylimits

length-two list of the y-axis limits for B allele frequencies and log R ratios, respectively

expandfun

a function that takes a length-one GRanges object as an argument and computes a width relative to the width of the GRanges object