VanillaICE (version 1.34.0)

IdiogramParams: Constructor for IdiogramParam objects

Description

Parameters for plotting idiograms

Usage

IdiogramParams(seqnames = character(), seqlengths = numeric(), unit = "kb", genome = "hg19", box = list(color = "blue", lwd = 1))
"plot"(x, y, ...)

Arguments

seqnames

length-one character vector providing chromosome name

seqlengths

length-one numeric vector indicating size of chromosome

unit

character string indicating unit for genomic position

genome

character string indicating genome build

box

a list of parameters for plotting the box around the part of the idiogram that is plotted

x

an IdiogramParam object

y

ignored

...

ignored

Value

IdiogramParam object