VanillaICE (version 1.34.0)

constrainMu2: Constraints for updating the means of the copy number states

Description

Constraints for updating the means of the copy number states

Constraints for updating the standard deviations of the BAFs

Restricted range for CN values

Usage

constrainMu2(mu)
constrainSd2(sigma)
copyNumberLimits(is.log)

Arguments

mu

numeric vector of means

sigma

numeric vector of standard deviations (non-negative)

is.log

whether copy number estimates are on log scale

Value

numeric vector of meansconstrained standard deviationsnumeric vector giving the lower and upper values of the restricted range

Examples

copyNumberLimits(is.log=TRUE)
copyNumberLimits(is.log=FALSE)