icePlatforms


When procecessing genotypes with the <span class="pkg">crlmm</span>, confidence
scores for the diallelic genotype calls are available.  One can
estimate the emission probabilities for the crlmm diallelic
genotypes using the confidence scores by setting the value of
<code>ICE</code> to TRUE in the constructor for the <code>HmmOptionList</code>
class.  Currently, only certain platforms are supported for this
option.


misc

Hidden Markov Models for characterizing chromosomal alterations in
high throughput SNP arrays.

Robert Scharpf

VanillaICE

A Hidden Markov Model for high throughput genotyping arrays

icePlatforms function

When procecessing genotypes with the <pkg>crlmm</pkg>, confidence
scores for the diallelic genotype calls are available.  One can
estimate the emission probabilities for the crlmm diallelic
genotypes using the confidence scores by setting the value of
<code>ICE</code> to TRUE in the constructor for the <code>HmmOptionList</code>
class.  Currently, only certain platforms are supported for this
option.

icePlatforms: List platforms for which ICE option is supported.

Description

Usage

Arguments

Value

References

Examples