updateHmmParams

a <code><a rd-options="" href="/link/SnpArrayExperiment?package=VanillaICE&version=1.34.0" data-mini-rdoc="VanillaICE::SnpArrayExperiment">SnpArrayExperiment</a></code> object

object

a <code><a rd-options="" href="/link/EmissionParam?package=VanillaICE&version=1.34.0" data-mini-rdoc="VanillaICE::EmissionParam">EmissionParam</a></code> object

emission_param

a <code><a rd-options="" href="/link/TransitionParam?package=VanillaICE&version=1.34.0" data-mini-rdoc="VanillaICE::TransitionParam">TransitionParam</a></code> object

transition_param


This function is not intended to be called directly by the user. It
is exported in the package NAMESPACE for internal use by other BioC
packages.


Hidden Markov Models for characterizing chromosomal alterations in
high throughput SNP arrays.

Robert Scharpf

VanillaICE

A Hidden Markov Model for high throughput genotyping arrays

updateHmmParams function

a <code><a href="SnpArrayExperiment" rd-options="">SnpArrayExperiment</a></code> object

a <code><a href="EmissionParam" rd-options="">EmissionParam</a></code> object

a <code><a href="TransitionParam" rd-options="">TransitionParam</a></code> object

This function is not intended to be called directly by the user. It
is exported in the package NAMESPACE for internal use by other BioC
packages.

updateHmmParams: Run the Baum-Welch algorithm to update HMM parameters

Description

Usage

Arguments