VariantAnnotation-defunct: Defunct Functions in Package VariantAnnotation
Description
The functions or variables listed here are no longer part
of VariantAnnotation.
usage
## Defunct in 1.9.z
readVcfLongForm() ## Removed in 1.9.z
dbSNPFilter()
regionFilter()
MatrixToSnpMatrix(callMatrix, ref, alt, ...)Details
## Defunct in 1.9.z:
readVcfLongForm has been replaced by expand. ## Removed in 1.9.z:
dbSNPFilter and regionFilter have been replaced by
filterVcf.
MatrixToSnpMatrix has been replaced by genotypeToSnpMatrix.