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VariantAnnotation (version 1.14.13)

VariantAnnotation-defunct: Defunct Functions in Package VariantAnnotation

Description

The functions or variables listed here are no longer part of VariantAnnotation.

Arguments

usage

## Defunct in 1.13.z
  • refLocsToLocalLocs().
## Removed
  • readVcfLongForm()
  • dbSNPFilter()
  • regionFilter()
  • MatrixToSnpMatrix()

Details

## Defunct in 1.13.z
  • refLocsToLocalLocs has been replaced by mapCoords.

## Removed

  • readVcfLongForm() has been replaced by expand().
  • dbSNPFilter() and regionFilter() have been replaced by filterVcf().
  • MatrixToSnpMatrix() has been replaced by genotypeToSnpMatrix().

See Also