RDocumentation
Moon
Learn R
Search all packages and functions
⚠️
There's a newer version (1.18.5) of this package.
Take me there.
VariantAnnotation (version 1.16.1)
Annotation of Genetic Variants
Description
Annotate variants, compute amino acid coding changes, predict coding outcomes
Copy Link
Copy
Link to current version
Version
Version
1.18.5
1.18.1
1.16.1
1.14.13
1.12.9
Down Chevron
Version
1.16.1
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in VariantAnnotation (1.16.1)
Search functions
PolyPhenDbColumns
PolyPhenDb Columns
predictCoding
Predict amino acid coding changes for variants
GLtoGP
Convert genotype likelihoods to genotype probabilities
locateVariants
Locate variants
VariantAnnotation-defunct
Defunct Functions in Package
VariantAnnotation
filterVcf
Filter VCF files
isSNV
Identification of genomic variant types.
getTranscriptSeqs
Get transcript sequences
PolyPhenDb-class
PolyPhenDb objects
genotypeToSnpMatrix
Convert genotype calls from a VCF file to a SnpMatrix object
ScanVcfParam-class
Parameters for scanning VCF files
readVcf
Read VCF files
scanVcf
Import VCF files
probabilityToSnpMatrix
Convert posterior genotype probability to a SnpMatrix object
SIFTDb-class
SIFTDb objects
PROVEANDb-class
PROVEANDb objects
VCFHeader-class
VCFHeader instances
VRanges-class
VRanges objects
summarizeVariants
Summarize variants by sample
VCF-class
VCF class objects
SIFTDbColumns
SIFTDb Columns
VcfFile
Manipulate Variant Call Format (Vcf) files.
snpSummary
Counts and distribution statistics for SNPs in a VCF object
VariantType-class
VariantType subclasses
VRangesList-class
VRangesList objects
writeVcf
Write VCF files