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VariantFiltering (version 1.8.1)

Filtering of coding and non-coding genetic variants

Description

Filter genetic variants using different criteria such as inheritance model, amino acid change consequence, minor allele frequencies across human populations, splice site strength, conservation, etc.

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Version

1.8.1

License

Artistic-2.0

Issues

Pull Requests

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Repository

https://github.com/rcastelo/VariantFiltering

Maintainer

Robert Castelo

Last Published

February 15th, 2017

Functions in VariantFiltering (1.8.1)

GenePhylostrataDb-class

PhastConsDb class

VariantFilteringResults-class

VariantFilteringResults class

WeightMatrix-class

Weight matrix class

VariantType-class

FiveSpliceSiteVariants and ThreeSpliceSiteVariants subclasses of VariantType

readAAradicalChangeMatrix

Read matrix of amino acid radical changes

xLinked

X-Linked inheritance analysis

autosomalDominant

Autosomal dominant inheritance analysis

autosomalRecessiveHeterozygous

Autosomal recessive inheritance analysis: Heterozygous

VariantFiltering-package

Filtering of coding and non-coding genetic variants

autosomalRecessiveHomozygous

Autosomal recessive inheritance analysis: Homozygous

VariantFiltering-deprecated

Deprecated functions in package VariantFiltering

VariantFiltering-defunct

Defunct functions in package VariantFiltering

deNovo

De Novo variants analysis

VariantFilteringParam-class

VariantFiltering parameter class

unrelatedIndividuals

Analysis designed to be applied over a group of unrelated individuals