matchVariants

%variant_in%

%variant_in%,GenomicRanges,GenomicRanges-method


    The variants (<code>GRanges</code>) to match into <code>table</code>; the alt
    allele must be in the &#147;alt&#148; metacolumn.
  


    The variants (<code>GRanges</code>) to be matched into; the alt
    allele must be in the &#147;alt&#148; metacolumn.
  

table


  These are <strong>deprecated</strong> functions for operating on the old
  variant GRanges. New code should use <code>match</code> and <code>%in%</code>.
  This function behaves like <code>match</code>, where two elements match when
  they share the same position and &#147;alt&#148; allele.


Tools for detecting, filtering, calling, comparing and
plotting variants.

Michael Lawrence

VariantTools

Tools for Working with Genetic Variants

matchVariants function

The variants (<code>GRanges</code>) to match into <code>table</code>; the alt
    allele must be in the <dQuote>alt</dQuote> metacolumn.

The variants (<code>GRanges</code>) to be matched into; the alt
    allele must be in the <dQuote>alt</dQuote> metacolumn.

These are <strong>deprecated</strong> functions for operating on the old
  variant GRanges. New code should use <code>match</code> and <code>%in%</code>.
  This function behaves like <code>match</code>, where two elements match when
  they share the same position and <dQuote>alt</dQuote> allele.

matchVariants: Match variants by position and allele

Description

Usage

Arguments

Value