plot_R_fit_comparison

<a href="https://lifecycle.r-lib.org/articles/stages.html#deprecated"><img src="figures/lifecycle-deprecated.svg?package=ViroReportR&version=1.0.4" alt="[Deprecated]"></a>
This function is deprecated and may be removed in a future release.
This function creates a ggplot comparing estimated reproduction numbers ($R$)
over time from multiple EpiEstim outputs. Each input should be a named object
produced by EpiEstim containing an <code>estimate_R$R</code> data frame.

internal

Tools for reporting and forecasting viral respiratory infections,
using case surveillance data. Report generation tools for short-term forecasts,
and validation metrics for an arbitrary number of customizable respiratory viruses.
Estimation of the effective reproduction number is based on the 'EpiEstim' framework
described in work by 'Cori' and colleagues. (2013) <doi:10.1093/aje/kwt133>.

Mike Irvine

ViroReportR

Respiratory Viral Infection Forecast Reporting

Caesar Wong

Nirupama Tamvada

Rebeca Falcao

Nelson Tang

plot_R_fit_comparison function

<dl><dt>...</dt>
<dd>Named EpiEstim output objects produced by <code>generate_forecast()</code>.
Each object should contain a data frame <code>estimate_R$R</code> with columns such as:<ul>
<li><code>t_start</code>, <code>t_end</code>: Time window indices</li>
<li><code>Median(R)</code>: Median estimated reproduction number</li>
<li><code>Quantile.0.025(R)</code> / <code>Quantile.0.975(R)</code>: 95% credible interval bounds</li>
<li><code>Quantile.0.25(R)</code> / <code>Quantile.0.75(R)</code>: 50% credible interval bounds</li>
</ul></dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#deprecated'><img src='figures/lifecycle-deprecated.svg' alt='[Deprecated]' /></a>
This function is deprecated and may be removed in a future release.
This function creates a ggplot comparing estimated reproduction numbers ($R$)
over time from multiple EpiEstim outputs. Each input should be a named object
produced by EpiEstim containing an <code>estimate_R$R</code> data frame.

Compare Reproduction Number Estimates from Multiple EpiEstim Outputs — plot_R_fit_comparison

<dl>

<dt>...</dt>
<dd>Named EpiEstim output objects produced by <code>generate_forecast()</code>.
Each object should contain a data frame <code>estimate_R$R</code> with columns such as:<ul>
<li><code>t_start</code>, <code>t_end</code>: Time window indices</li>
<li><code>Median(R)</code>: Median estimated reproduction number</li>
<li><code>Quantile.0.025(R)</code> / <code>Quantile.0.975(R)</code>: 95% credible interval bounds</li>
<li><code>Quantile.0.25(R)</code> / <code>Quantile.0.75(R)</code>: 50% credible interval bounds</li>
</ul></dd>

</dl>

plot_R_fit_comparison: Compare Reproduction Number Estimates from Multiple EpiEstim Outputs

Description

Usage

Value

Arguments

See Also