run_galaxy_function

This function executes the provided function as a galaxy processing
This provided function is expected to take two parameters:<ul>
<li>args, a list of command line parameters</li>
<li>logger, the logger created for the tool</li>
</ul>

Provides a set of utility function to prevent the spread of
utilities script in W4M (Workflow4Metabolomics) scripts, and centralize
them in a single package.
Some are meant to be replaced by real packages in a near future, like
the parse_args() function: it is here only to prepare the ground for
more global changes in W4M scripts and tools.

Lain Pavot

W4MRUtils

Utils List for W4M - Workflow for Metabolomics

Melanie Petera

run_galaxy_function function

<dl><dt>tool_name</dt>
<dd><ul>
<li>The name of the tool</li>
</ul></dd>
<dt>func</dt>
<dd><ul>
<li>The function to be run, after galaxy header is displayed</li>
</ul></dd>
<dt>...</dt>
<dd><ul>
<li>Parameters propagated to run_galaxy_processing</li>
</ul></dd></dl>

Arguments

Author

run_galaxy_function - automate running functions in galaxy — run_galaxy_function

<dl>

<dt>tool_name</dt>
<dd><ul>
<li>The name of the tool</li>
</ul></dd>


<dt>func</dt>
<dd><ul>
<li>The function to be run, after galaxy header is displayed</li>
</ul></dd>


<dt>...</dt>
<dd><ul>
<li>Parameters propagated to run_galaxy_processing</li>
</ul></dd>

</dl>

run_galaxy_function: run_galaxy_function - automate running functions in galaxy

Description

Usage

Arguments

Author

See Also