W4MRUtils (version 1.0.0)

show_galaxy_header: show_galaxy_header - shows the header for glaxy tools

Description

This function prints the header to display in galaxy's tools logs

Usage

show_galaxy_header(
  tool_name,
  tool_version,
  args = NULL,
  logger = NULL,
  show_start_time = TRUE,
  show_sys = TRUE,
  show_parameters = TRUE
)

Arguments

tool_name

a character(1) holding the running tool's name.

tool_version

a character(1) holding the running tool's version.

args

a list(param="value") - if provided, their are the parameters shown in galaxy header and/or footer.

logger

a get_logger("name") instance - if provided, the galaxy footer if output from the logger.

show_start_time

• a logical telling whether to display the start time or not.

show_sys

• a logical telling whether to display the system variables or not.

show_parameters

• a logical telling whether to display the parameters or not.

Author

L.Pavot

See Also

run_galaxy_processing

Examples

show_galaxy_header("Tool Name", "1.2.0")
show_galaxy_header(
  tool_name = "Tool Name",
  tool_version = "1.2.0",
  logger = get_logger("Some Tool"),
  show_start_time = FALSE,
  show_sys = FALSE,
  show_parameters = FALSE
)