source_local

source_local
Transforms a relative path to an absolute one, and sources the path.
This helps source files located relatively to the main script without
the need to know from where it was run.

Provides a set of utility function to prevent the spread of
utility scripts in W4M (Workflow4Metabolomics) tools, and centralize
them in a single package.
To note, some are meant to be replaced by the use of dedicated packages in the future, like
the parse_args() function: it is here only to prepare the ground for
more global changes in W4M scripts and tools.
This package is used by part of the W4M Galaxy modules, some of them
being available on the community-maintained GitHub repository for
Metabolomics' Galaxy tools <https://github.com/workflow4metabolomics/tools-metabolomics>.
See Delporte et al (2025) <doi:10.1002/cpz1.70095> for more details.

Melanie Petera

W4MRUtils

Useful Functions for Harmonized W4M Tool Development

Lain Pavot

Helge Hecht

source_local function

<dl><dt>...</dt>
<dd>paths, character vector of file paths to source</dd>
<dt>env</dt>
<dd>an environement in which to source the paths</dd>
<dt>do_print</dt>
<dd>a logical, telling whether to print sourced paths or
not</dd>
<dt>keep_source</dt>
<dd>See the parameter keep.source from source</dd></dl>

Arguments

source_local - source file, from absolute or relative path — source_local

<dl>

<dt>...</dt>
<dd>paths, character vector of file paths to source</dd>


<dt>env</dt>
<dd>an environement in which to source the paths</dd>


<dt>do_print</dt>
<dd>a logical, telling whether to print sourced paths or
not</dd>


<dt>keep_source</dt>
<dd>See the parameter keep.source from source</dd>

</dl>

source_local: source_local - source file, from absolute or relative path

Description

Usage

Value

Arguments

See Also