WCQ (version 0.2)

wcq: WCQ QTL detection

Description

Performs QTL detection using Chen-Qin two sample mean test.

Usage

wcq(marker_data, trait_data, alleles)

Arguments

marker_data

m x n matrix/array containing marker score data; m is the number of markers, n is the number of samples

trait_data

t x n matrix/array containing trait value data; t is the number of traits, n is the number of samples

alleles

vector containing the marker scores representing the alleles; currently supports diploids only; third entry assumed to be score for heterozygous marker

Value

pval_matrix

m x t array/matrix containing p-values of each marker as being a potential QTL for a trait

Examples

data(sample.markers)
data(sample.traits)
alleles <- c(1,2,3)
wcq(sample.markers, sample.traits, alleles)