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WGCNA (version 1.41-1)

branchEigengeneDissim: Branch dissimilarity based on eigennodes (eigengenes).

Description

Calculation of branch dissimilarity based on eigennodes (eigengenes) in single set and multi-data situations. This function is used as a plugin for the dynamicTreeCut package and the user should not call this function directly. This function is experimental and subject to change.

Usage

branchEigengeneDissim(
  expr, 
  branch1, branch2, 
  corFnc = cor, corOptions = list(use = "p"), 
  signed = TRUE, ...)
mtd.branchEigengeneDissim(
  multiExpr, 
  branch1, branch2,
  corFnc = cor, corOptions = list(use = 'p'),
  consensusQuantile = 0, 
  signed = TRUE, ...)

Arguments

expr
Expression data.
multiExpr
Expression data in multi-set format.
branch1
Branch 1.
branch2
Branch 2.
corFnc
Correlation function.
corOptions
Other arguments to the correlation function.
consensusQuantile
Consensus quantile.
signed
Should the network be considered signed?
...
Other arguments for compatibility; currently unused.

Value

  • A single number or a list containing details of the calculation.