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WGScan (version 0.1)

A Genome-Wide Scan Statistic Framework for Whole-Genome Sequence Data Analysis

Description

Functions for the analysis of whole-genome sequencing studies to simultaneously detect the existence, and estimate the locations of association signals at genome-wide scale. The functions allow genome-wide association scan, candidate region scan and single window test.

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Version

Install

install.packages('WGScan')

Monthly Downloads

164

Version

0.1

License

GPL-3

Maintainer

Zihuai He

Last Published

May 27th, 2019

Functions in WGScan (0.1)

WGScan.info

hg19 chromosome sizes
WGScan.example

Data example for WGScan (A Genome-Wide Scan Statistic Framework For Whole-Genome Sequence Data Analysis)
WGScan.VCF.chr

Scan a VCF file to study the association between an quantitative/dichotomous outcome variable and a region or whole chromosome by score type statistics allowing for multiple functional annotation scores.
WGScan.Region

Scan the association between an quantitative/dichotomous outcome variable and a region by score type statistics allowing for multiple functional annotation scores.
WGScan.SingleWindow

Test the association between an quantitative/dichotomous outcome variable and a single window by dispersion or burden test allowing for multiple functional annotation scores.
WGScan.prelim

The preliminary data management for WGScan