select_top_weights

It shows the connections between selected clusters from the latest time point and the clusters from all the previous time points. The transition matrices between time point t and t+1 are obtained from Waddington-OT analysis <https://github.com/ScialdoneLab/WOTPLY>.

Gabriele Lubatti

WOTPLY

Plot Connectivity Between Cells from Different Time Points

select_top_weights function

<dl><dt>transition_matrix</dt>
<dd>Output from get_transition_matrix.</dd>
<dt>top_link</dt>
<dd>Integer.Maximum number of links to select between clusters at time t and clusters at time t+1. Links are sorted according to the weight and then only the top_link are kept. If NULL (default), all the links are kept.</dd></dl>

Arguments

Gabriele Lubatti <a href="/link/gabriele.lubatti%40helmholtz-muenchen.de?package=WOTPLY&version=0.1.0" data-mini-rdoc="WOTPLY::gabriele.lubatti@helmholtz-muenchen.de">gabriele.lubatti@helmholtz-muenchen.de</a>

Author

select_top_weights — select_top_weights

<dl>

<dt>transition_matrix</dt>
<dd>Output from get_transition_matrix.</dd>


<dt>top_link</dt>
<dd>Integer.Maximum number of links to select between clusters at time t and clusters at time t+1. Links are sorted according to the weight and then only the top_link are kept. If NULL (default), all the links are kept.</dd>

</dl>

Gabriele Lubatti <a href='mailto:gabriele.lubatti@helmholtz-muenchen.de'>gabriele.lubatti@helmholtz-muenchen.de</a>

select_top_weights: select_top_weights

Description

Usage

Value

Arguments

Author