fillInputDataFrame

internal

The web version WebGestalt <https://www.webgestalt.org> supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.

Yuxing Liao

WebGestaltR

Gene Set Analysis Toolkit WebGestaltR

Jing Wang

Eric Jaehnig

Zhiao Shi

Quanhu Sheng

fillInputDataFrame function

<dl><dt>gmt</dt>
<dd>A Data Frame with geneSet and gene columns from the GMT file</dd>
<dt>genes</dt>
<dd>A vector of genes</dd>
<dt>geneSets</dt>
<dd>A vector of gene sets</dd></dl>

Arguments

Author

Fill relation data frame for GSEA input — fillInputDataFrame

<dl>

<dt>gmt</dt>
<dd>A Data Frame with geneSet and gene columns from the GMT file</dd>


<dt>genes</dt>
<dd>A vector of genes</dd>


<dt>geneSets</dt>
<dd>A vector of gene sets</dd>

</dl>

Fill relation data frame for GSEA input

fillInputDataFrame: Fill relation data frame for GSEA input

Description

Usage

Value

Arguments

Author