gseaPermutation

internal

The web version WebGestalt <https://www.webgestalt.org> supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.

Yuxing Liao

WebGestaltR

Gene Set Analysis Toolkit WebGestaltR

Jing Wang

Eric Jaehnig

Zhiao Shi

Quanhu Sheng

gseaPermutation function

<dl><dt>inset_scores</dt>
<dd>Scaled score matrix for genes in sets</dd>
<dt>outset_scores</dt>
<dd>Normalized score matrix for genes not in sets</dd>
<dt>expression_value</dt>
<dd>Vector of gene rank scores</dd></dl>

Arguments

Author

Permutaion in GSEA algorithm — gseaPermutation

<dl>

<dt>inset_scores</dt>
<dd>Scaled score matrix for genes in sets</dd>


<dt>outset_scores</dt>
<dd>Normalized score matrix for genes not in sets</dd>


<dt>expression_value</dt>
<dd>Vector of gene rank scores</dd>

</dl>

Permutaion in GSEA algorithm

gseaPermutation: Permutaion in GSEA algorithm

Description

Usage

Value

Arguments

Author