prepareGseaInput

A helper to read files for performing standard GSEA.

The web version WebGestalt <https://www.webgestalt.org> supports 12 organisms, 354 gene identifiers and 321,251 function categories. Users can upload the data and functional categories with their own gene identifiers. In addition to the Over-Representation Analysis, WebGestalt also supports Gene Set Enrichment Analysis and Network Topology Analysis. The user-friendly output report allows interactive and efficient exploration of enrichment results. The WebGestaltR package not only supports all above functions but also can be integrated into other pipeline or simultaneously analyze multiple gene lists.

Yuxing Liao

WebGestaltR

Gene Set Analysis Toolkit WebGestaltR

Jing Wang

Eric Jaehnig

Zhiao Shi

Quanhu Sheng

prepareGseaInput function

<dl><dt>rankFile</dt>
<dd>Path of the rnk file</dd>
<dt>gmtFile</dt>
<dd>Path of the GMT file</dd></dl>

Arguments

Prepare input for standard GSEA — prepareGseaInput

<dl>

<dt>rankFile</dt>
<dd>Path of the rnk file</dd>


<dt>gmtFile</dt>
<dd>Path of the GMT file</dd>

</dl>

prepareGseaInput: Prepare input for standard GSEA

Description

Usage

Value

Arguments