sample_onset_dates

Line-list data, onset dates, with some missing.

datasets

A collection of functions related to novel methods for estimating R(t),
created by the lab of Professor Laura White. Currently implemented methods include
two-step Bayesian back-calculation and now-casting for line-list data with missing reporting delays,
adapted in 'STAN' from Li (2021) <doi:10.1371/journal.pcbi.1009210>,
and calculation of time-varying reproduction number assuming a flux between various adjacent states, adapted into 'STAN' from
Zhou (2021) <doi:10.1371/journal.pcbi.1010434>.

Chad Milando

WhiteLabRt

Novel Methods for Reproduction Number Estimation,
Back-Calculation, and Forecasting

Tenglong Li

Zhenwei Zhou

Laura White

sample_onset_dates function

A vector of length 6380, one value per case.<dl>
<dt>Date</dt>
<dd>Date of onset</dd>
</dl>

Format

Sample onset dates — sample_onset_dates

A vector of length 6380, one value per case.<dl>
<dt>Date</dt>
<dd>Date of onset</dd>


</dl>

sample_onset_dates: Sample onset dates

Description

Usage

Arguments

Format