XBSeq (version 1.2.2)

dispTable: Access the dispersion table information for a XBSeqDataSet object

Description

A method adopted from DESeq to examine the dispersion table information for a XBSeqDataSet object

Usage

dispTable(object, ...)

Arguments

object

a XBSeqDataSet

...

further argumnts are ignored

Value

Dispersion table information for a XBSeqDataSet object

References

H. I. Chen, Y. Liu, Y. Zou, Z. Lai, D. Sarkar, Y. Huang, et al., "Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads," BMC Genomics, vol. 16 Suppl 7, p. S14, Jun 11 2015.

See Also

estimateSCV, dispEst, XBSeqDataSet

Examples

   conditions <- factor(c(rep('C1', 3), rep('C2', 3)))
   data(ExampleData)
   XB <- XBSeqDataSet(Observed, Background, conditions)
   XB <- estimateRealCount(XB)
   XB <- estimateSizeFactors(XB)
   XB <- estimateSCV(XB, fitType='local')
   dispTable(XB)