call_sr

This function is internally used to solve the PCST.

internal

Tools to analyze sex differences in omics data for complex diseases. It includes functions for differential expression analysis using the 'limma' method <doi:10.1093/nar/gkv007>, interaction testing between sex and disease, pathway enrichment with 'clusterProfiler' <doi:10.1089/omi.2011.0118>, and gene regulatory network (GRN) construction and analysis using 'igraph'. The package enables a reproducible workflow from raw data processing to biological interpretation.

Enrico Glaab

XYomics

Analysis of Sex Differences in Omics Data for Complex Diseases

Sophie Le Bars

Mohamed Soudy

Murodzhon Akhmedov

call_sr function

<dl><dt>from</dt>
<dd>A <code>CharacterVector</code> that corresponds to <code>head</code> nodes of the edges.</dd>
<dt>to</dt>
<dd>A <code>CharacterVector</code> that corresponds the <code>tail</code> nodes of the edges.</dd>
<dt>cost</dt>
<dd>A <code>NumericVector</code> which represents the edge weights.</dd>
<dt>node_names</dt>
<dd>A <code>CharacterVector</code> demonstrates the names of the nodes.</dd>
<dt>node_prizes</dt>
<dd>A <code>NumericVector</code> which corresponds to the node prizes.</dd></dl>

Arguments

Author

Internal function call_sr — call_sr

<dl>

<dt>from</dt>
<dd>A <code>CharacterVector</code> that corresponds to <code>head</code> nodes of the edges.</dd>


<dt>to</dt>
<dd>A <code>CharacterVector</code> that corresponds the <code>tail</code> nodes of the edges.</dd>


<dt>cost</dt>
<dd>A <code>NumericVector</code> which represents the edge weights.</dd>


<dt>node_names</dt>
<dd>A <code>CharacterVector</code> demonstrates the names of the nodes.</dd>


<dt>node_prizes</dt>
<dd>A <code>NumericVector</code> which corresponds to the node prizes.</dd>

</dl>

call_sr: Internal function `call_sr`

Description

Usage

Arguments

Author